PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g073200.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 126aa MW: 14981.2 Da PI: 10.3002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g073200.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.8e-14	5	48	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +ek r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+l+p Solyc06g073200.2.1 5 REKIVRQRAETRVGCRAMILVRKISSGKWVVTKFVKEHSHPLCP 48 367889************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-11	6	48	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MPDKREKIVR QRAETRVGCR AMILVRKISS GKWVVTKFVK EHSHPLCPGK GRRDLIYDQY 60 PNEHDKIREL SQQLAAEKKR SATYKRHLEM IFEHIEEHNQ SLSKKIQDIV HNVRELESRD 120 EHHHR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g073200.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241418.1	1e-87	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015077850.1	1e-87	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0V0HLI0	8e-86	A0A0V0HLI0_SOLCH; Uncharacterized protein
TrEMBL	M1CKJ5	8e-86	M1CKJ5_SOLTU; Uncharacterized protein
STRING	Solyc06g073200.2.1	1e-87	(Solanum lycopersicum)
STRING	PGSC0003DMT400069495	1e-86	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25
Representative plant	OGRP10299	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	9e-66	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g073200.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]