PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g073210.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 233aa MW: 26320.4 Da PI: 8.6669

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g073210.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.4	2.7e-19	50	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C +++ + +++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ Solyc06g073210.2.1 50 YYDEYAGMTGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRPVSL---VNQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 135 8*******************************876666666555...778888999***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-17	50	135	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTMDVHNLED NGAGRVESSA EGQVSTSEAD RTQEPNEGMT FESEEAARAY YDEYAGMTGF 60 ITRVLSSRKS ERDGSIISRG LGCRGIPDNQ RPVSLVNQKR DRRRDGCTAM ILVKREKPGT 120 WVVRKFVRDH NHPLVIPPSK RRPTSDEKDK RIQELTAELR TKKRLTAAYR EQLLSLMKDV 180 ESHSEHLSAK VQAVQSILKE LEAKRQELSN HSGHHKNSRV YTPVESDYDG TD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g073210.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241417.1	1e-160	protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A3Q7HVF2	1e-154	A0A3Q7HVF2_SOLLC; Uncharacterized protein
STRING	Solyc06g073210.2.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc06g073210.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]