PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g074160.1.1
Common NameLOC101264021
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 255aa    MW: 29496.7 Da    PI: 5.5042
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g074160.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.8e-16231031397
                         TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                  B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            l +p +f+++  g ++  s  l +e +  rsW+v +  +k  + +++++GW +Fv++n+L+  D + F + g+s+f   vk++
  Solyc06g074160.1.1  23 YLKLKIPSRFFKNLnGDIPVIS-LLEVEGSARRSWRVVI--EKIEEDFYFKGGWTKFVQDNNLENEDYLNFLYAGNSTF--SVKIY 103
                         44589******77687777776.999999999*******..**********************************9999..77776 PP
2B356.84.1e-18157249398
                         EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          + ++++++++ +l +p +f +++   g+    + ++   +++g+sW v +   ++s+r  l+kGW+++ ++n+L +gD++ Fkl+++++f
  Solyc06g074160.1.1 157 EIVMKKSNFSNMLLNFPSTFGKKYmkrGQ--VFE-KMATLQTDGKSWPVVV---RSSDRLKLRKGWRQYLQDNDLHVGDVLRFKLIDEENF 241
                         5677999*****************76333..344.5666677*********...8999*****************************9*** PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                          l+v ++r
  Solyc06g074160.1.1 242 ILKVLIRR 249
                         99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-198107IPR015300DNA-binding pseudobarrel domain
CDDcd100179.18E-1111103No hitNo description
Gene3DG3DSA:2.40.330.101.1E-1811106IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1213106IPR003340B3 DNA binding domain
PfamPF023627.4E-1425103IPR003340B3 DNA binding domain
PROSITE profilePS5086311.57526106IPR003340B3 DNA binding domain
SuperFamilySSF1019361.77E-16154249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.605155251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-17155248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.58E-15155249No hitNo description
SMARTSM010192.6E-11156251IPR003340B3 DNA binding domain
PfamPF023625.3E-16157249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MERNYVGNGF PAFIKVYSPE TCYLKLKIPS RFFKNLNGDI PVISLLEVEG SARRSWRVVI  60
EKIEEDFYFK GGWTKFVQDN NLENEDYLNF LYAGNSTFSV KIYGTNGYLK QELNAIAELE  120
LHPLDEENPN EIQVVSPLAD EELDGSENSL VSVTLFEIVM KKSNFSNMLL NFPSTFGKKY  180
MKRGQVFEKM ATLQTDGKSW PVVVRSSDRL KLRKGWRQYL QDNDLHVGDV LRFKLIDEEN  240
FILKVLIRRI TFDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g074160.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242112.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A3Q7GZQ70.0A0A3Q7GZQ7_SOLLC; Uncharacterized protein
STRINGSolyc06g074160.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Representative plantOGRP1628723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.23e-13B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]