PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g075140.2.1
Common NameLOC101258380
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 259aa    MW: 28673.5 Da    PI: 8.1167
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g075140.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.31.2e-19169203135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  Solyc06g075140.2.1 169 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRL 203
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.75E-15163225No hitNo description
SMARTSM004011.4E-15163213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358167199IPR000679Zinc finger, GATA-type
CDDcd002022.20E-16168217No hitNo description
Gene3DG3DSA:3.30.50.103.4E-14168200IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003201.6E-17169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVEQNYMDGI SMGHIENEDF ESILNGLDFS IQNLEADRLD EDWDATVYGE LLGPIPSETL  60
MSLPPLELTN VDNVFPEAQG NVIFQTGSPI SVLENTRSCS GGRSAISFNF GSKGRRSKRA  120
RSSTLNPWLK MAPMPCTTSA AKKNSDSKIG KVNKRKLSSA MASPLFKRCT HCEVTKTPQW  180
REGPLGPKTL CNACGVRYRS GRLLPEYRPA ASPTFIPSLH SNSHKKVVEM RRKTVESSPE  240
FDSQNFVPLG SYLLDEYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g075140.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242094.20.0GATA transcription factor 11-like
TrEMBLA0A3Q7H0T50.0A0A3Q7H0T5_SOLLC; Uncharacterized protein
STRINGSolyc06g075140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.28e-43GATA transcription factor 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]