PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g075510.2.1
Common NameLOC100736535
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 475aa    MW: 52534.1 Da    PI: 7.9137
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g075510.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17151200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Solyc06g075510.2.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 200
                         78*******************......55************************997 PP
2AP239.31.6e-12243291153
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                         s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k 
  Solyc06g075510.2.1 243 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 291
                         79********.7******5553..2.26**********99**********886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-9151200IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16151209IPR016177DNA-binding domain
SMARTSM003803.5E-32152214IPR001471AP2/ERF domain
PROSITE profilePS5103217.662152208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17152209IPR001471AP2/ERF domain
CDDcd000181.42E-23152207No hitNo description
PfamPF008471.2E-7243290IPR001471AP2/ERF domain
CDDcd000186.57E-24243303No hitNo description
SuperFamilySSF541713.73E-16243302IPR016177DNA-binding domain
SMARTSM003806.2E-30244307IPR001471AP2/ERF domain
PROSITE profilePS5103215.132244301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-15244301IPR001471AP2/ERF domain
PRINTSPR003672.6E-5245256IPR001471AP2/ERF domain
PRINTSPR003672.6E-5283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLDLNVSVIY NNDLPQVSLL DESATSNSSL RNAEATTSAG DEDSCAGELF AFNFGILKVE  60
GAETSRSSNN DDEEGYGKNQ RVTHSQFVTR QLFPVDDGEL NRKQTDRVIL SSARSGTSIG  120
FGDVRIIQQQ QTEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHTAARA YDRAAIKFRG VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR  240
GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK TSGREAVTNF  300
EPSSYEGETM SLPQSEGSQH DLDLNLGIST TSSKENDRLG GSRYHPYDMQ DATKPKMDKP  360
GSVIVGSSHL KGLPMSSQQA QLWTGIYSNF SSSYEGRAYD KRKDTGSSQG PPNWALQMPS  420
QVDTNSPLTM FCTAASSGFF IPSTTSITSS TSALATSTNA SQCFYQINPR LPLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.7400.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in developing branch and spikelet meristems at very early stages of inflorescence formation, and is maintained uniformly in the spikelet meristems until floral organs initiation. Present in some floral organ primordia. {ECO:0000269|PubMed:22003982}.
UniprotTISSUE SPECIFICITY: Highly expressed in developing panicles and in young seedlings (PubMed:20017947, PubMed:22003982). Present at low levels at all developmental stages (PubMed:22003982). {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g075510.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233891.20.0APETALA2-like protein AP2e
SwissprotQ84TB51e-102AP22_ORYSJ; APETALA2-like protein 2
TrEMBLF6KQN50.0F6KQN5_SOLLC; AP2 transcription factor SlAP2e
STRINGSolyc06g075510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Karlova R, et al.
    Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.
    Plant Cell, 2011. 23(3): p. 923-41
    [PMID:21398570]
  3. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  4. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  5. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]