PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g076290.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 126aa    MW: 14089.4 Da    PI: 10.0068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g076290.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS31.13.1e-1086167120
                GRAS  67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                          ++++ + ++ l+a+++++ +sP+  +s+++aN+ I   + +++ +HiiDf+i 
  Solyc06g076290.1.1   8 FAKRRISAADILKAFQVYVTASPFRMMSNIIANKSIGMLTREATSIHIIDFGIL 61 
                         44445558999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.291125IPR005202Transcription factor GRAS
PfamPF035141.0E-7861IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MESLIRSFAK RRISAADILK AFQVYVTASP FRMMSNIIAN KSIGMLTREA TSIHIIDFGI  60
LITGIDFPQA GFRPAERVEE TGRRLVYENS PRDDVLRLIK QIKPDVFLHG IVNGAYNSNF  120
LCNSI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g076290.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576235.16e-44PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14
SwissprotQ9SNB89e-24SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A2G2WND42e-44A0A2G2WND4_CAPBA; Scarecrow-like protein 11
TrEMBLA0A2G3CBK26e-45A0A2G3CBK2_CAPCH; Scarecrow-like protein 30
STRINGSolyc06g076290.1.14e-87(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2843222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.23e-26GRAS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]