PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g082590.1.1
Common NamePTI6, SlCRF1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 249aa    MW: 27912.9 Da    PI: 4.7271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g082590.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.7e-2196146155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +grW+AeIrdp+    r kr++lg+++t+eeAa  +++a+ kl+g
  Solyc06g082590.1.1  96 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAVVYDKAAVKLKG 146
                         59********.**********84....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.4E-1164248IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.90E-3296154No hitNo description
PfamPF008474.5E-1397146IPR001471AP2/ERF domain
SMARTSM003801.1E-3997160IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2397156IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-3197155IPR001471AP2/ERF domain
PROSITE profilePS5103224.26397154IPR001471AP2/ERF domain
PRINTSPR003679.1E-1098109IPR001471AP2/ERF domain
PRINTSPR003679.1E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTENSVPVIK FTQHIVTTNK HVFSEHNEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR  60
RVKRHVTEIN LMPSTKSIGD RKRRSVSPDS DVTRRKKFRG VRQRPWGRWA AEIRDPTRGK  120
RVWLGTYDTP EEAAVVYDKA AVKLKGPDAV TNFPVSTTAE VTVTVTETET ESVADGGDKS  180
ENDVALSPTS VLCDNDFAPF DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGDEFGEFDF  240
DDFALEAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2196155161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2196155464ATERF1
3gcc_A6e-2196155464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18196KRRSVSPDSDVTRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.35740.0callus| cell culture| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Function -- GeneRIF ? help Back to Top
  1. This study provides a clear picture of SlCRF1 and SlCRF2 expression patterns across tissues during development and in response to cytokinin and specific stresses indicating their importance in plant growth and environmental responses.[SlCRF1]
    [PMID: 24081612]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g082590.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1644194e-59Solanum lycopersicum DNA-binding protein Pti6 gene, promoter and partial cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233991.10.0pathogenesis-related genes transcriptional activator PTI6
SwissprotO046820.0PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLM1CZU01e-152M1CZU0_SOLTU; Uncharacterized protein
STRINGSolyc06g082590.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-36cytokinin response factor 4
Publications ? help Back to Top
  1. Gu YQ, et al.
    Tomato transcription factors pti4, pti5, and pti6 activate defense responses when expressed in Arabidopsis.
    Plant Cell, 2002. 14(4): p. 817-31
    [PMID:11971137]
  2. Shi X,Gupta S,Rashotte AM
    Characterization of two tomato AP2/ERF genes, SlCRF1 and SlCRF2 in hormone and stress responses.
    Plant Cell Rep., 2014. 33(1): p. 35-45
    [PMID:24081612]
  3. Zhou J,Tang X,Martin GB
    The Pto kinase conferring resistance to tomato bacterial speck disease interacts with proteins that bind a cis-element of pathogenesis-related genes.
    EMBO J., 1997. 16(11): p. 3207-18
    [PMID:9214637]