PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g083430.1.1

Common Name

LOC101248117

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 326aa MW: 37625.6 Da PI: 6.5327

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g083430.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.7	7.2e-19	40	122	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ Li+a++e++ +l++g+lk+ +Weev++ + ++ gf ++s++qC++k+e+l+kry++++ ++++yfd ++ Solyc06g083430.1.1 40 WTHQETFNLIQAYQEKWYSLKKGQLKASQWEEVAITVaARCGFdepSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFDLMD 122 *********************************9966667766579***************98766664......3599999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-19	39	124	No hit	No description
PROSITE profile	PS50090	6.26	39	100	IPR017877	Myb-like domain
SMART	SM00595	2.8E-5	47	129	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MATPSSPPPL LLPPPESNQP QISPNPPIPS PQKKTQPIPW THQETFNLIQ AYQEKWYSLK 60 KGQLKASQWE EVAITVAARC GFDEPSKSAT QCRHKIEKLR KRYRAERLKP YPNSWQYFDL 120 MDRMERGPLP IAAHPVAMVK CQNSNSTSDQ RYYDTDSDEV DVSFMDLRKN KCKSINHIVR 180 GEMGMMGVNV VADNRNVNRM VKDRNFDPMR GMRNSMNEKR KGYFENVGIN NDDDDVEEEA 240 DEEEDDVDGE GSVGGSELAA EIRGFAERFM RMESKKIEMM KETERFRMEM EKRRMEMILE 300 TQRNLIDTIN SVVGSHKKVK VAHEF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g083430.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240868	5e-10	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-35c8 map 1, complete sequence
GenBank	AC246175	5e-10	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-34o13 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323086.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A3Q7H4W8	0.0	A0A3Q7H4W8_SOLLC; Uncharacterized protein
STRING	Solyc06g083430.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12466	15	16
Representative plant	OGRP4059	11	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-32	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc06g083430.1.1
Entrez Gene	101248117

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]