PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083840.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 69aa    MW: 7839.01 Da    PI: 4.4611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083840.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.92.5e-161059149
                 NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk 49
                        lppGf+F Ptdeel+++yL +k++++k  + ++ + e+d++++ePw+Lp 
  Solyc06g083840.2.1 10 LPPGFKFCPTDEELICHYLYNKIANEKGLVLNFsLVEIDLHTCEPWQLPV 59
                        79**********************9995454555**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-16860IPR003441NAC domain
PROSITE profilePS5100517.6521068IPR003441NAC domain
PfamPF023652.6E-81155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MDLRDVGATL PPGFKFCPTD EELICHYLYN KIANEKGLVL NFSLVEIDLH TCEPWQLPVI  60
DFRETSNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g083840.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242365.12e-36protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3Q7H1Y95e-35A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRINGSolyc06g083840.2.11e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1976633
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.27e-20NAC domain containing protein 74
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]