PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g083850.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 171aa    MW: 20005.5 Da    PI: 5.7703
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g083850.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.8e-11128102129
                 NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
                         ++ktLvfyk+rap+g ktdW+mhe+rle
  Solyc06g083850.2.1   1 MRKTLVFYKNRAPNGIKTDWIMHEFRLE 28 
                         89***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.217146IPR003441NAC domain
SuperFamilySSF1019411.96E-16147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MRKTLVFYKN RAPNGIKTDW IMHEFRLEIP HIPLKEDWVL CRVFYKNKGE NNNNCTNKLS  60
SQNKCEAIVT SSNVSQSPIY MNQHSLNCDI KYQNSPHQII QNSNIIHHHL FDLLVKDHLE  120
TTRLTECSQE DDQYGLLFDM NFEESYVQDE QIHSSLEGMR FDDENSAVLI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.232250.0fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g083850.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242365.11e-124protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A3Q7H1Y91e-122A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRINGSolyc06g083850.2.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-23NAC domain containing protein 74
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]