PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g005400.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 441aa MW: 45915.5 Da PI: 6.7258

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g005400.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	265	310	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Solyc07g005400.2.1 265 HSIAERLRRERIAERLKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 310 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.45E-13	258	314	No hit	No description
SuperFamily	SSF47459	6.02E-17	258	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.428	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-16	262	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	265	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	266	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MNSLLSQQQQ SQISLQDLQN GGNGGSTGGV GGLSQHSMGH SHFDPTSSHD DFLEQILSSV 60 PSSSPWPDLS KSWDPHHHLS SPPHNPSSGE DQPPSNPFHS QFHYDDQASS LLASKLRQHQ 120 ITSGGGAAAA AKALMLQQQL LLSRTLAGNG LRSPNGASGD NGLLSLPLNL SNGDQNDGVA 180 NPTNDNSVQA LFNGFTGSLG QTSNQPQHFH HPQGGSMQSQ SFGAPAMNQT PAASGSAGGG 240 GGSTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERL KALQELVPNA NKTDKASMLD 300 EIIDYVKFLQ LQVKVLSMSR LGGAPLVADM SSEGRGEGNV GRGGNGRASS SSNNETMTVT 360 EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTT RISNNPLLAP EAGGSTSPTL 420 SALTVQSATA GKDATSLSET *

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MNSLLSQQQQ SQISLQDLQN GGNGGSTGGV GGLSQHSMGH SHFDPTSSHD DFLEQILSSV  60
PSSSPWPDLS KSWDPHHHLS SPPHNPSSGE DQPPSNPFHS QFHYDDQASS LLASKLRQHQ  120
ITSGGGAAAA AKALMLQQQL LLSRTLAGNG LRSPNGASGD NGLLSLPLNL SNGDQNDGVA  180
NPTNDNSVQA LFNGFTGSLG QTSNQPQHFH HPQGGSMQSQ SFGAPAMNQT PAASGSAGGG  240
GGSTPAAQPK QQRVRARRGQ ATDPHSIAER LRRERIAERL KALQELVPNA NKTDKASMLD  300
EIIDYVKFLQ LQVKVLSMSR LGGAPLVADM SSEGRGEGNV GRGGNGRASS SSNNETMTVT  360
EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTT RISNNPLLAP EAGGSTSPTL  420
SALTVQSATA GKDATSLSET *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	274	RLRRER

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.7244	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g005400.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242577.1	0.0	transcription factor bHLH82-like
Refseq	XP_025887621.1	0.0	transcription factor bHLH82-like
Swissprot	Q9ZUG9	2e-82	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A3Q7H687	0.0	A0A3Q7H687_SOLLC; Uncharacterized protein
STRING	Solyc07g005400.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-51	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Solyc07g005400.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]