PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g009110.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ARR-B

Protein Properties

Length: 579aa MW: 65564.1 Da PI: 4.5898

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g009110.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	65.3	1.1e-20	192	245	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++F eav++L + P+ ile+m+v+gLtl++++SHLQkYR Solyc07g009110.1.1 192 KTRIVWTDDLHSKFQEAVNKL-NDGRCFPSDILEAMNVPGLTLYQIASHLQKYRN 245 68*****************.899***************************6 PP
2	Response_reg	34.5	1e-12	19	119	1	102
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl++dD++ + + + +le+++y +v+++d++++ + +l + + +Dl+++ ++ p++ ++ll + +++ + i ++ ++ + a++a Solyc07g009110.1.1 19 VLLIDDDKEFVNEMIYLLESHEY-KVRTVDTASQGMSMLSKGKenIDLMIINMNSPDLLSFQLLNQAITSD-IVSICIC-DEYDTRSAKKA 106 89*******************.***********777667********99999998875555.3555555.5566699 PP HHTTESEEEESS- CS Response_reg 90 lkaGakdflsKpf 102 ++ Ga +l Kp Solyc07g009110.1.1 107 FENGAYFYLQKPL 119 *********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.2300	3.8E-15	16	153	No hit	No description
SuperFamily	SSF52172	2.99E-15	16	137	IPR011006	CheY-like superfamily
SMART	SM00448	2.7E-4	17	128	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	22.686	18	132	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.2E-7	19	119	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.79E-10	20	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-21	190	246	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	190	245	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-18	192	246	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-5	196	244	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MIENSMINFY HDLINEVSVL LIDDDKEFVN EMIYLLESHE YKVRTVDTAS QGMSMLSKGK 60 ENIDLMIINM NSPDLLSFQL LNQAITSDIV SICICDEYDT RSAKKAFENG AYFYLQKPLL 120 HEYVKSMWQL VLQKNIQKVK VIDLDKQEND IHETTNGVVC NEKYKLKRKR GKKLIEEKKS 180 ESSATKVVIQ QKTRIVWTDD LHSKFQEAVN KLNDGRCFPS DILEAMNVPG LTLYQIASHL 240 QKYRNNTWKA PRKRKSTCHS SSQLGTSSGS SNLRIFETIS HLKRNVTNLQ QQETQRAPKT 300 PFLPNNNIFS RGESSSLQKV YHPQLQVDPQ YFNPFDTPLL SSSENNNVVG LQQHEKPLSE 360 SWGLQGSNIG TAEYTPGLKF NEINHAQNNY ALDVEKYSTM FDTNITNPTI NELVAANIDF 420 QQYIGELQGS NIESADYTPG LKFNNGIPHA QNDYALDVAS YATLPNTNIA NPTIDGLSVA 480 NIGFEQHIDE QNMVQPLNNV VTTSHMSGTQ ESEPSEMMNC DEFFDFDNMD FFFQNDEPPS 540 FDLSNELDSA FDQAYSDDMA TSSAQFPDIT SFLDDSST*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MIENSMINFY HDLINEVSVL LIDDDKEFVN EMIYLLESHE YKVRTVDTAS QGMSMLSKGK  60
ENIDLMIINM NSPDLLSFQL LNQAITSDIV SICICDEYDT RSAKKAFENG AYFYLQKPLL  120
HEYVKSMWQL VLQKNIQKVK VIDLDKQEND IHETTNGVVC NEKYKLKRKR GKKLIEEKKS  180
ESSATKVVIQ QKTRIVWTDD LHSKFQEAVN KLNDGRCFPS DILEAMNVPG LTLYQIASHL  240
QKYRNNTWKA PRKRKSTCHS SSQLGTSSGS SNLRIFETIS HLKRNVTNLQ QQETQRAPKT  300
PFLPNNNIFS RGESSSLQKV YHPQLQVDPQ YFNPFDTPLL SSSENNNVVG LQQHEKPLSE  360
SWGLQGSNIG TAEYTPGLKF NEINHAQNNY ALDVEKYSTM FDTNITNPTI NELVAANIDF  420
QQYIGELQGS NIESADYTPG LKFNNGIPHA QNDYALDVAS YATLPNTNIA NPTIDGLSVA  480
NIGFEQHIDE QNMVQPLNNV VTTSHMSGTQ ESEPSEMMNC DEFFDFDNMD FFFQNDEPPS  540
FDLSNELDSA FDQAYSDDMA TSSAQFPDIT SFLDDSST*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	172	LKRKRGKK
2	248	254	KAPRKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g009110.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323484.2	0.0	putative two-component response regulator ARR20
TrEMBL	A0A3Q7H4Q0	0.0	A0A3Q7H4Q0_SOLLC; Uncharacterized protein
STRING	Solyc07g009110.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA813	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	4e-26	response regulator 12

Link Out ? help Back to Top
Phytozome	Solyc07g009110.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]