PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g018010.2.1
Common NameLOC101266736
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 254aa    MW: 28701.9 Da    PI: 4.6287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g018010.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-135395754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI +L
  Solyc07g018010.2.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95
                        57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-1745110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2284695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-1149100No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-105395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.02E-5175239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHNQER RIRGEISELE SGRSSSKKNS  120
NDVEFEQDES FDSKPKRSRR FEMQYGYDSS GSTTRSPPSS SPVDVLELRV SSMGEKTVVV  180
SLTCSKRTDT MVKVCEVFES LNIKIISANI TAFSGRLLKT AFIEADEEER DLLKLRIETA  240
IASLNDPDSP MSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-145195953Transcription factor MYC2
5gnj_B9e-145195953Transcription factor MYC2
5gnj_E9e-145195953Transcription factor MYC2
5gnj_F9e-145195953Transcription factor MYC2
5gnj_G9e-145195953Transcription factor MYC2
5gnj_I9e-145195953Transcription factor MYC2
5gnj_M9e-145195953Transcription factor MYC2
5gnj_N9e-145195953Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.102471e-45callus| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g018010.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536451e-150Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242918.10.0transcription factor bHLH35
SwissprotQ2HIV96e-86BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3Q7H5Q10.0A0A3Q7H5Q1_SOLLC; Uncharacterized protein
STRINGSolyc07g018010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-75bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]