PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g021550.2.1
Common NameLOC101254007
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HRT-like
Protein Properties Length: 457aa    MW: 51051.8 Da    PI: 10.1247
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g021550.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like49.75.9e-16272302131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCGv+l++GsvC r+P  g+KRC+eHKGm++
  Solyc07g021550.2.1 272 ICGVALGHGSVCIRPPKTGNKRCAEHKGMKV 302
                         8****************************97 PP
2HRT-like42.69.9e-14330359130
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                         iCG+il+ G  C r P + +KRC eHKG+R
  Solyc07g021550.2.1 330 ICGFILDSGASCARIPFQRNKRCMEHKGRR 359
                         8****************************9 PP
3HRT-like48.61.4e-15419449131
            HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                         iCGv+l+dGs+C+ qP  gRKRCe HK mR+
  Solyc07g021550.2.1 419 ICGVHLNDGSFCTSQPTVGRKRCEGHKCMRV 449
                         8*****************************7 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT  60
SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN  120
SELHVGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS  180
NGVRRHNAVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK  240
STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM  300
KVNSVKSKLI AEGNGSTRPC VSIDEENSPI CGFILDSGAS CARIPFQRNK RCMEHKGRRN  360
RGSNSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC  420
GVHLNDGSFC TSQPTVGRKR CEGHKCMRVK EPISSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.239360.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g021550.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242942.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLA0A3Q7HA300.0A0A3Q7HA30_SOLLC; Uncharacterized protein
STRINGSolyc07g021550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-84effector of transcription2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]