PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g045000.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 177aa MW: 19954.8 Da PI: 5.5191

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g045000.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	26.6	1.4e-08	1	19	36	54
G2-like 36 mkvkgLtlehvkSHLQkYR 54 m vkgL ++hvkSHLQ+YR Solyc07g045000.2.1 1 MAVKGLKISHVKSHLQMYR 19 89***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-7	1	21	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MAVKGLKISH VKSHLQMYRN LKERGNLNMV RSVNNFHEET PQFSWSSPQH VCEALLEHGP 60 SKSSKQIDPG SDKLPNYKAI INAYIAENNI YCYDYQEAQG SLSSGMTKEE EDDDGGGGGG 120 PSSEIYEFSH EREINFWPLN DYNHQNSQYD SSKKQVLNST KDNSHINLDL SISSYF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8404	0.0	callus

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g045000.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323925.1	1e-129	uncharacterized protein LOC101246548 isoform X2
TrEMBL	A0A3Q7HA81	1e-127	A0A3Q7HA81_SOLLC; Uncharacterized protein
STRING	Solyc07g045000.2.1	1e-129	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Link Out ? help Back to Top
Phytozome	Solyc07g045000.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]