PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g045550.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SAP
Protein Properties Length: 382aa    MW: 43079.3 Da    PI: 6.5617
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g045550.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP589.39.9e-180638179454
                 SAP  79 vcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfad 169
                         vcstwravsrsdllwq+l++riW+r +ll+ tW++ey+y+hrt++nfr+ ry y tl+f  a++d+dn+ d lsCr++alsd++laaGf+d
  Solyc07g045550.1.1   6 VCSTWRAVSRSDLLWQNLSNRIWNRDRLLHPTWHDEYVYWHRTSNNFRQCRYVYRTLHFVRANNDDDNN-DGLSCRRIALSDRHLAAGFSD 95 
                         9*************************************************************9888866.********************* PP

                 SAP 170 GavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGl 260
                         G+v+lf+l +r+h+st++pq+rdrlGr+sra+sGi++sd +lvfa+ldGdihv v+  a + ++rra lGdvvndGalvdf+G+grWw+Gl
  Solyc07g045550.1.1  96 GSVQLFHLISRAHLSTYYPQQRDRLGRYSRAISGIILSDEKLVFASLDGDIHVVVLGEADQYPPRRARLGDVVNDGALVDFTGRGRWWIGL 186
                         **********************************************************9******************************** PP

                 SAP 261 yaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssld 351
                         yaGvpGrafh+W++ete+l+f  G ltdPea++GWh+ltel++lvGrvrvt r+tavaCt  +lvv+dl+nqg++lre+++++ liv+s+d
  Solyc07g045550.1.1 187 YAGVPGRAFHVWNSETEQLIFADGDLTDPEALTGWHLLTELMDLVGRVRVTARDTAVACTGPQLVVIDLHNQGLILRERSFQHELIVGSFD 277
                         ******************************************************************************************* PP

                 SAP 352 asneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvng.gyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvav 440
                         a+++++v+vd rGvatvrr e+l+e crf+vrg +qrgv+g +n  gy++++ g v+rvWe+e+ + ylyslrer+gevna+ a++rh+ +
  Solyc07g045550.1.1 278 ATSDSLVAVDGRGVATVRRTEDLDESCRFNVRGaSQRGVVGSMNSsGYGVMCVGEVIRVWEVENGV-YLYSLRERIGEVNAMHANERHIVA 367
                         *********************************9**********549*****************88.************************ PP

                 SAP 441 sssdgtihlldfga 454
                         +ssdgtihl+dfga
  Solyc07g045550.1.1 368 CSSDGTIHLWDFGA 381
                         ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813832.01E-5355IPR001810F-box domain
Gene3DG3DSA:1.20.1280.506.2E-4445No hitNo description
SMARTSM003208752102IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.7E-1374149IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.04E-1575151IPR017986WD40-repeat-containing domain
SuperFamilySSF509785.04E-15216378IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.7E-13254379IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5029410.654334381IPR017986WD40-repeat-containing domain
SMARTSM003200.084341378IPR001680WD40 repeat
PROSITE profilePS500829.005361381IPR001680WD40 repeat
PROSITE patternPS006780365379IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSFNLVCSTW RAVSRSDLLW QNLSNRIWNR DRLLHPTWHD EYVYWHRTSN NFRQCRYVYR  60
TLHFVRANND DDNNDGLSCR RIALSDRHLA AGFSDGSVQL FHLISRAHLS TYYPQQRDRL  120
GRYSRAISGI ILSDEKLVFA SLDGDIHVVV LGEADQYPPR RARLGDVVND GALVDFTGRG  180
RWWIGLYAGV PGRAFHVWNS ETEQLIFADG DLTDPEALTG WHLLTELMDL VGRVRVTARD  240
TAVACTGPQL VVIDLHNQGL ILRERSFQHE LIVGSFDATS DSLVAVDGRG VATVRRTEDL  300
DESCRFNVRG ASQRGVVGSM NSSGYGVMCV GEVIRVWEVE NGVYLYSLRE RIGEVNAMHA  360
NERHIVACSS DGTIHLWDFG A*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g045550.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536010.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-50p24 map 7, complete sequence
GenBankAC2536330.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243875.10.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH11e-136SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A3Q7H9Z10.0A0A3Q7H9Z1_SOLLC; Uncharacterized protein
STRINGSolyc07g045550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40992345
Representative plantOGRP9756912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-138SAP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]