PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g045560.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

SAP

Protein Properties

Length: 74aa MW: 7740.8 Da PI: 11.851

Description

SAP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g045560.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SAP	57.3	2.5e-18	7	64	24	81
SAP 24 assgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcs 81 ++g +g+ + r n+vwpePflealatq+ai++++s+ rlaaa+al n+fqv + Solyc07g045560.1.1 7 VGGGRGGGRRRLRGGGNNGVWPEPFLEALATQMAINTTSSINRLAAAQALSNLFQVHT 64 3445667788888889****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MSTSEQVGGG RGGGRRRLRG GGNNGVWPEP FLEALATQMA INTTSSINRL AAAQALSNLF 60 QVHTPLKLLY TLS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g045560.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253601	1e-122	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-50p24 map 7, complete sequence
GenBank	AC253633	1e-122	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-4f18 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243875.1	2e-34	transcriptional regulator STERILE APETALA
TrEMBL	A0A3Q7HAI3	7e-45	A0A3Q7HAI3_SOLLC; Uncharacterized protein
STRING	Solyc07g045560.1.1	1e-45	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15887	5	6
Representative plant	OGRP18039	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35770.1	9e-08	SAP family protein

Link Out ? help Back to Top
Phytozome	Solyc07g045560.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]