PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g052490.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 85aa MW: 9634.7 Da PI: 4.6562

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g052490.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	35	77	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ ++++E+ l+++ + + + W++Ia +++ gR + ++ +w Solyc07g052490.2.1 35 KLEFSEDEEMLIAKMFSLVRER-WSLIAGRIP-GRNADEIEKYWK 77 678***************99.*****.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.623	30	84	IPR017930	Myb domain
SMART	SM00717	1.9E-5	34	82	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-7	36	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.3E-11	37	78	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.34E-7	37	81	IPR009057	Homeodomain-like
CDD	cd00167	6.67E-5	37	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MADWNRSSTS DNASVVSPDS TRVVALETTN EETSKLEFSE DEEMLIAKMF SLVRERWSLI 60 AGRIPGRNAD EIEKYWKSKY SKSQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g052490.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001352307.1	2e-55	MYB-like transcription factor ATV
TrEMBL	A0A2H5AJN7	5e-54	A0A2H5AJN7_SOLLC; MYB-like transcriptional factor MYBATV-X1 transcript variant 1
STRING	Solyc07g052490.2.1	2e-54	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6579	19	32
Representative plant	OGRP3921	8	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46410.1	3e-15	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Solyc07g052490.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]