PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g052830.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 321aa MW: 35723.9 Da PI: 4.848

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g052830.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	82	8.5e-26	147	221	4	78
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkep 78 + lws++D+++lL+G++++k+ +g++p +d++af+ef+k++++++vsksql+eK++rLKkKf ++ ++++++ e Solyc07g052830.2.1 147 RFLWSDDDQLALLKGIVEYKEVEGMEPNADMSAFHEFIKGKLQVEVSKSQLSEKLKRLKKKFLTNDDEKHKEVEE 221 569***********************************************************9998874333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-19	149	216	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MALKIKSRLV DQPPSASSSE DQELVEESHE EEQQQSGEGE GEEESGEETE EPKTAHPVVK 60 RFLTQKLQLS SESGSENGSG SESEAESGHS LPSPSASDFT VKPSVPAKAA APSKSVAKRP 120 QKAQKEKGRK KPKIAEEEEK KSAATPRFLW SDDDQLALLK GIVEYKEVEG MEPNADMSAF 180 HEFIKGKLQV EVSKSQLSEK LKRLKKKFLT NDDEKHKEVE EQVAVKEVVR EDIVKDDHQD 240 FQSEYPRLAA SFESMAGMSA MYPNGSSFLK EKLSLIATDK AKELEEKWKK LEDDEAALMV 300 KRLDFIAEHY KLVVDAMRGN *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.5303	0.0	fruit\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of tuber formation and persists throughout tuber development. {ECO:0000269\|PubMed:12028578}.
Uniprot	TISSUE SPECIFICITY: Expressed in tubers and in leaves treated with sucrose. {ECO:0000269\|PubMed:12028578}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g052830.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253591	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence
GenBank	AC253611	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence
GenBank	BT013680	0.0	Lycopersicon esculentum clone 132502R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015170368.1	1e-135	PREDICTED: neurofilament heavy polypeptide-like isoform X1
Refseq	XP_015170369.1	1e-136	PREDICTED: neurofilament heavy polypeptide-like isoform X2
Swissprot	Q94IK2	2e-70	STK_SOLTU; STOREKEEPER protein
TrEMBL	A0A3Q7I8D9	3e-93	A0A3Q7I8D9_SOLLC; Uncharacterized protein
STRING	Solyc07g052830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41
Representative plant	OGRP10748	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	9e-15	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc07g052830.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]