PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g052900.1.1

Common Name

LOC101243904

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 398aa MW: 44075.4 Da PI: 5.7162

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g052900.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	105.2	5.1e-33	154	245	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +++lws++D+++lL+G++++k+ +g++ps+d++af+ef++++++++vsksq+++K+rrL+kKf ++vk+ g+ep+f+k++d +fe+sk Solyc07g052900.1.1 154 PRSLWSDDDQLALLKGILEYKTVKGMEPSADMSAFHEFIRGKLQAEVSKSQISDKVRRLRKKFLTNVKD---GEEPVFTKSQDFLVFEHSK 241 6789*************************************************************99...*************** PP DUF573 94 kiWg 97 +iWg Solyc07g052900.1.1 242 RIWG 245 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-26	156	245	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MAPKTKSRLV DQPPSASSSE EQELVEESQE EEEQQSREEE GEEESGEETE EDEEPKTSHP 60 VVKRPISQKL VQTPQKPQFS SGSENGSGSD SEAESGSSLP SPSASAFTVK PNVAAKAAAS 120 SKATPKRPQE AQKEKGRKKP KVAEEEEKKS AATPRSLWSD DDQLALLKGI LEYKTVKGME 180 PSADMSAFHE FIRGKLQAEV SKSQISDKVR RLRKKFLTNV KDGEEPVFTK SQDFLVFEHS 240 KRIWGAPGAI NGGVKDNVNN SSNGKAKKSV EVRKISEPKR SAKVSKPKDD EKQKEEEKQI 300 AVKEVVKEDI VKGDQLDFQS KYPRLAASLE AMSGLSKMYP NGTSLLKEKM SLIATDKAKV 360 LEEKWKILED DEADLMVKRL DFIAEHYRLV VDAMRGN*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MAPKTKSRLV DQPPSASSSE EQELVEESQE EEEQQSREEE GEEESGEETE EDEEPKTSHP  60
VVKRPISQKL VQTPQKPQFS SGSENGSGSD SEAESGSSLP SPSASAFTVK PNVAAKAAAS  120
SKATPKRPQE AQKEKGRKKP KVAEEEEKKS AATPRSLWSD DDQLALLKGI LEYKTVKGME  180
PSADMSAFHE FIRGKLQAEV SKSQISDKVR RLRKKFLTNV KDGEEPVFTK SQDFLVFEHS  240
KRIWGAPGAI NGGVKDNVNN SSNGKAKKSV EVRKISEPKR SAKVSKPKDD EKQKEEEKQI  300
AVKEVVKEDI VKGDQLDFQS KYPRLAASLE AMSGLSKMYP NGTSLLKEKM SLIATDKAKV  360
LEEKWKILED DEADLMVKRL DFIAEHYRLV VDAMRGN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25170	0.0	floral bud\| flower\| fruit\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of tuber formation and persists throughout tuber development. {ECO:0000269\|PubMed:12028578}.
Uniprot	TISSUE SPECIFICITY: Expressed in tubers and in leaves treated with sucrose. {ECO:0000269\|PubMed:12028578}.

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269\|PubMed:12028578}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g052900.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253591	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence
GenBank	AC253611	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004243436.1	0.0	STOREKEEPER protein
Swissprot	Q94IK2	0.0	STK_SOLTU; STOREKEEPER protein
TrEMBL	A0A0V0ILV0	0.0	A0A0V0ILV0_SOLCH; Putative neurofilament heavy polypeptide-like
STRING	Solyc07g052900.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2369	20	41
Representative plant	OGRP10748	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-24	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc07g052900.1.1
Entrez Gene	101243904

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]