PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g053680.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 180aa    MW: 20860.2 Da    PI: 4.8694
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g053680.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.31.3e-1499242128
                 NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                          +Pw++ +   a++   yf ++++k  ++++r +r++ +g+Wk +gk kev+++kg+l+   k+L +  g +++k  + +W+m ey l
  Solyc07g053680.1.1   9 NDPWQIFEG--AKSYTRYFITPQKK--QNSQRVSRTVGKGTWKPQGKGKEVFDNKGRLIKYVKSLKYTYGkSDNKNANGEWLMTEYYL 92 
                         589999522..23335577776655..4679************************************866366777899*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0631115IPR003441NAC domain
SuperFamilySSF1019413.27E-189115IPR003441NAC domain
PfamPF023651.7E-61091IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVTNLYADND PWQIFEGAKS YTRYFITPQK KQNSQRVSRT VGKGTWKPQG KGKEVFDNKG  60
RLIKYVKSLK YTYGKSDNKN ANGEWLMTEY YLNDGYLDAR EIKNKDYVIC KIKKKRNPND  120
NENRVSNENM NDVEELIDSS LQLEDDINVE EDDVGNEVLT ILDKEDHGDP NVECLKEYP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g053680.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348969.11e-103PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3Q7HCG41e-127A0A3Q7HCG4_SOLLC; Uncharacterized protein
STRINGSolyc07g053680.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.12e-10NAC with transmembrane motif1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]