PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g054380.1.1
Common NameLOC101262734
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23593 Da    PI: 10.1933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g054380.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-1967121256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq + Le+ F+++ ++   +++eLA+kl+L+ rqV vWFqNrRa+ k
  Solyc07g054380.1.1  67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTK 121
                         678899***********************************************98 PP
2HD-ZIP_I/II113.99.7e-3767155189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl+keq++lLE+sF+++++L   +K+ela +L+l+prqv+vWFqnrRARtk+kq+E+d+e++k+++++l++en+rL+ke +eLr+
  Solyc07g054380.1.1  67 RKKLRLTKEQSTLLEDSFKQHTTLAMGQKQELAAKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFMKKWCQSLNDENNRLKKELQELRS 155
                         69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-1845124IPR009057Homeodomain-like
SuperFamilySSF466897.7E-1857124IPR009057Homeodomain-like
PROSITE profilePS5007116.60163123IPR001356Homeobox domain
SMARTSM003891.6E-1565127IPR001356Homeobox domain
PfamPF000463.8E-1667121IPR001356Homeobox domain
CDDcd000861.64E-1367124No hitNo description
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PfamPF021832.3E-9123155IPR003106Leucine zipper, homeobox-associated
SMARTSM003408.3E-17123166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGNNSNEACD TRLTLGLATS DHHKKKITCL DLSIIPLHDT SKIDGSSSKT CKNYTKFNSE  60
SKKIGMRKKL RLTKEQSTLL EDSFKQHTTL AMGQKQELAA KLKLKPRQVE VWFQNRRART  120
KLKQTEVDCE FMKKWCQSLN DENNRLKKEL QELRSIKIDQ RAPTPTPFHL SKTRTLALCS  180
SCQKISGGDT DEKHETGLDD GLSKRAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARTKLKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g054380.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243806.21e-151homeobox-leucine zipper protein HAT22-like
SwissprotA2XE761e-45HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-45HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A3Q7I9B21e-150A0A3Q7I9B2_SOLLC; Uncharacterized protein
STRINGSolyc07g054380.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-43HD-ZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]