PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g062160.2.1
Common NameLOC101249106
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 299aa    MW: 32065.8 Da    PI: 4.6148
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g062160.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.3e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Solyc07g062160.2.1  4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47
                        7*****999*********************66899999999986 PP
2zf-B_box28.14.1e-095390237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                        ++++C+ ++e    +fC +++ llC++C  ++H    H
  Solyc07g062160.2.1 53 SMPMCDICQETVGYFFCLEDRALLCRKCDIAIHTAnpH 90
                        689********9*********************55663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000211.20E-7347No hitNo description
SMARTSM003362.8E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3145299IPR000315B-box-type zinc finger
SMARTSM003362.9E-155299IPR000315B-box-type zinc finger
PfamPF006432.0E-65389IPR000315B-box-type zinc finger
CDDcd000214.47E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC  60
QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT GVKVGLEPVD PGGISSSGTS  120
QSIQKVSEPE SAPLSKRNAS VSLDAQFNKV LPTQVSGIED FAPTKSPFAG GSAAGSMPQW  180
QFDEFIGLSD FNQNYGYMDD GSSKADNGKL GGESDSSSIL RVEDEELDGD ECLGQVPDTS  240
WAVPQVPSPP TASGLYWPKT YQNPFDSAVF VPDISYSPSS SLQQQPPSGT RLKRRRQC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.118090.0callus| flower| fruit| leaf| trichome
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g062160.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244294.10.0B-box zinc finger protein 22 isoform X2
SwissprotQ9SYM21e-102BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A3Q7HE670.0A0A3Q7HE67_SOLLC; Uncharacterized protein
STRINGSolyc07g062160.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-93light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]