PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g062790.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 175aa MW: 20255.1 Da PI: 8.5965

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g062790.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.2e-18	17	71	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F ++++++ e++ +L+++lg++ rq+++W+qNrRa++k+ Solyc07g062790.1.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKN 71 56789************************************************95 PP
2	HD-ZIP_I/II	97.9	9.8e-32	17	108	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl++eqvklLE sF++++kL+ e+K +l+reLg+ prq+ +W+qnrRAR+k++ +E+dy+aL+ ++++ +e+ Leke++ L+ el+ Solyc07g062790.1.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKNQSMENDYNALQLKLENALSEKMLLEKETKILQGELE 107 79*************************************************************************************9997 PP HD-ZIP_I/II 93 e 93 + Solyc07g062790.1.1 108 K 108 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.115	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.57E-17	13	81	IPR009057	Homeodomain-like
SMART	SM00389	6.3E-17	14	76	IPR001356	Homeobox domain
CDD	cd00086	5.70E-14	15	73	No hit	No description
Pfam	PF00046	8.7E-16	17	71	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.1E-19	19	79	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MNSSFNSQNL QKYSKHNKKR LNQEQVKLLE ASFDSTKKLD LEKKLQLSRE LGVPPRQISI 60 WYQNRRARWK NQSMENDYNA LQLKLENALS EKMLLEKETK ILQGELEKAN EMLIGLKSGA 120 QGQIREFTLS TCCEDLISYS TTTRVPNDEV NYSNLQFDEL YAMIGMSNKC CSTW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g062790.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009791458.1	4e-69	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_016444534.1	4e-69	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A3Q7HHD8	1e-124	A0A3Q7HHD8_SOLLC; Uncharacterized protein
STRING	Solyc07g062790.1.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-30	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Solyc07g062790.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]