PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g062980.2.1
Common NameLOC101258473
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 133aa    MW: 15039.3 Da    PI: 9.1368
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g062980.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-411993276
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                        Cqve Cea+l  ak+yh+rhkvC+vh+kap vl++gl+qrfCqqCs+fhelsefD +k+sCr rL++hn+rrrk+
  Solyc07g062980.2.1 19 CQVETCEANLDGAKKYHKRHKVCQVHAKAPIVLLAGLKQRFCQQCSKFHELSEFDGTKKSCRLRLDGHNKRRRKT 93
                        *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-311680IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.9831693IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-371795IPR004333Transcription factor, SBP-box
PfamPF031101.1E-321992IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MANNDAGEGV VMQVMKHYCQ VETCEANLDG AKKYHKRHKV CQVHAKAPIV LLAGLKQRFC  60
QQCSKFHELS EFDGTKKSCR LRLDGHNKRR RKTPLPIELE DNQCRLINGE ARPHMDMTLS  120
SRNTIYTADI SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3119921184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g062980.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244240.12e-96squamosa promoter-binding-like protein 3
SwissprotQ387411e-34SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A3Q7HEP34e-95A0A3Q7HEP3_SOLLC; Uncharacterized protein
STRINGSolyc07g062980.2.17e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-36squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]