PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g063670.2.1

Common Name

LOC104648581

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NZZ/SPL

Protein Properties

Length: 353aa MW: 38654.9 Da PI: 8.5702

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g063670.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	20.9	6.1e-07	22	207	37	181
NOZZLE 37 tetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgdtssvaaisntatrlpvpvdrg.vvlqgfps......... 117 t++ + gr+ sk +q+k+k+p rgmgv +ler +++++ k+ ++ +v + +n pv+ g p Solyc07g063670.2.1 22 TNQTSTGGRRRSSKNGQKKKKQPQ-RGMGVEQLERLRVQDQMKNSTIHGVHHNHQYYSNNNFPKLTPVSSFTGgGSASADPGnysnsilns 111 45566779*******9999996.******************9999999987766666655566654333022233333666777778 PP NOZZLE 118 ....................slgssrilcggvgsgqvmi........dpvispwgfvetsatt...helssisnpqmynass.nnrcdtcf 176 + + g + q+mi + + +gf + +t +el ++n n s +rc +c Solyc07g063670.2.1 112 spvlqfpklcavspndffmqQKVVNTGFIGSSSTNQLMIsshdhhqfQSQMNLYGFATSKPSTeksKELYPMPNLFSSNNSCfSDRCRSCN 202 8888888888777776644422224444555555677773222111123456688875543331114555555544434443267888999 PP NOZZLE 177 kkkrl 181 kkkr+ Solyc07g063670.2.1 203 KKKRM 207 88886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	9.0E-5	22	152	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MATSLQFSSD HHPIPQENHQ TTNQTSTGGR RRSSKNGQKK KKQPQRGMGV EQLERLRVQD 60 QMKNSTIHGV HHNHQYYSNN NFPKLTPVSS FTGGGSASAD PGNYSNSILN SSPVLQFPKL 120 CAVSPNDFFM QQKVVNTGFI GSSSTNQLMI SSHDHHQFQS QMNLYGFATS KPSTEKSKEL 180 YPMPNLFSSN NSCFSDRCRS CNKKKRMING EEISVHMEDM IREKEDSGTK PLLHSYSLPS 240 HQQKGVEIVA IHRKGSSSAL SSDEGAVMME YDFFPEKISS KSTNTYKSCF ENEATMMSAY 300 NSPESSSFAA AAAAAGNIIN GEASSVTTIS WAADTTTTSP TSSIDLSLKL SC*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MATSLQFSSD HHPIPQENHQ TTNQTSTGGR RRSSKNGQKK KKQPQRGMGV EQLERLRVQD  60
QMKNSTIHGV HHNHQYYSNN NFPKLTPVSS FTGGGSASAD PGNYSNSILN SSPVLQFPKL  120
CAVSPNDFFM QQKVVNTGFI GSSSTNQLMI SSHDHHQFQS QMNLYGFATS KPSTEKSKEL  180
YPMPNLFSSN NSCFSDRCRS CNKKKRMING EEISVHMEDM IREKEDSGTK PLLHSYSLPS  240
HQQKGVEIVA IHRKGSSSAL SSDEGAVMME YDFFPEKISS KSTNTYKSCF ENEATMMSAY  300
NSPESSSFAA AAAAAGNIIN GEASSVTTIS WAADTTTTSP TSSIDLSLKL SC*

Function -- GeneRIF ? help Back to Top
this study uncovers a new function for the tomato SlSPL/HYDRA gene in the control of fruit initiation. [PMID: 28134991]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g063670.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001335302.1	0.0	SPOROCYTELESS/NOOZLE-like protein
TrEMBL	A0A1J0RE57	0.0	A0A1J0RE57_SOLLC; SPOROCYTELESS/NOOZLE-like protein
STRING	Solyc07g063670.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12499	7	8
Representative plant	OGRP10010	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	5e-07	sporocyteless (SPL)

Link Out ? help Back to Top
Phytozome	Solyc07g063670.2.1
Entrez Gene	104648581

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Rojas-Gracia P, et al. The parthenocarpic hydra mutant reveals a new function for a SPOROCYTELESS-like gene in the control of fruit set in tomato. New Phytol., 2017. 214(3): p. 1198-1212 [PMID:28134991]