PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g063830.2.1

Common Name

LOC101263532

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 480aa MW: 52230 Da PI: 6.5876

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g063830.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7e-06	368	406	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Solyc07g063830.2.1 368 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 406 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.49E-7	349	410	No hit	No description
PROSITE profile	PS50888	12.335	357	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-9	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-12	367	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0064	368	412	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MAEEFQLGRG NWWESSTSAS STTTTSSSRN KFIDSGISSC TTPSASSTTG LSSMASNFVN 60 WPIEIHEDIK VRSENSSMVF SGTDSHKRYA SGGGGGGVGQ GVLSVDDPNL QIMGLGLSSQ 120 GLDWNQPFFR SEKSGSGFRS LIQEGLSSNA NYQQEGTCQE QDHNNWSTQK LYHGNSDDSS 180 VNDYNKQLFS GHNNNLENSA VPYGSPSNML QGLLISDLNS QQQESNNFSS VSRSLYYNPS 240 YNNQPNCDVN IPTSTSSSSW SKFPQFLRTS DPSKVVQQWS LSQSPPLSHS QLSHFSGGTS 300 FWNATSAAAE DVRSGFLPQL PTNPTVDEKP KHTGEVRNTS TVTKKNSSET SNKRPRNEAP 360 SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHDQV NVLSTPYMKS 420 GASIQHQQNT GDKSNVNPEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR*

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MAEEFQLGRG NWWESSTSAS STTTTSSSRN KFIDSGISSC TTPSASSTTG LSSMASNFVN  60
WPIEIHEDIK VRSENSSMVF SGTDSHKRYA SGGGGGGVGQ GVLSVDDPNL QIMGLGLSSQ  120
GLDWNQPFFR SEKSGSGFRS LIQEGLSSNA NYQQEGTCQE QDHNNWSTQK LYHGNSDDSS  180
VNDYNKQLFS GHNNNLENSA VPYGSPSNML QGLLISDLNS QQQESNNFSS VSRSLYYNPS  240
YNNQPNCDVN IPTSTSSSSW SKFPQFLRTS DPSKVVQQWS LSQSPPLSHS QLSHFSGGTS  300
FWNATSAAAE DVRSGFLPQL PTNPTVDEKP KHTGEVRNTS TVTKKNSSET SNKRPRNEAP  360
SPLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHDQV NVLSTPYMKS  420
GASIQHQQNT GDKSNVNPEG GKQDLRSRGL CLVPVSSTFP VTHETTVDFW TPTFGGTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g063830.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233122	8e-28	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-12d17 map 10, complete sequence
GenBank	AC240192	8e-28	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-107b5 map 10, complete sequence
GenBank	AC240224	8e-28	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-61e6 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004244171.1	0.0	transcription factor bHLH123
TrEMBL	A0A3Q7HHF6	0.0	A0A3Q7HHF6_SOLLC; Uncharacterized protein
STRING	Solyc07g063830.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86
Representative plant	OGRP3135	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-68	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc07g063830.2.1
Entrez Gene	101263532

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]