PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g063840.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 157aa MW: 18606.6 Da PI: 4.992

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g063840.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	41.5	3.6e-13	70	154	12	97
DUF573 12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++L+ + d+k+ktg p+ ++ +f+ si ++++s++ lv+Ki +K+ +++ ++ +g++p ++++ d++if+ls+++Wg Solyc07g063840.1.1 70 SLAILRSMWDYKSKTGDFPYPPSIELLNFIMYSIpNLTISREKLVKKITTFKNNYNDAWEL--DGDHPGLDRPVDREIFNLSMRLWG 154 589****************99999999999984589*******************..*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-9	70	154	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MLHENDRKRL RSDEKEESDE TGEGKTEELD PNEDEKERRR RRAVKKGKQS MSGRQSDADY 60 YDYDYDYNQS LAILRSMWDY KSKTGDFPYP PSIELLNFIM YSIPNLTISR EKLVKKITTF 120 KNNYNDAWEL DGDHPGLDRP VDREIFNLSM RLWGDH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g063840.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246009	3e-06	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-46g19 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630430.1	1e-25	PREDICTED: ABC transporter F family member 4-like
TrEMBL	A0A3Q7HF05	1e-110	A0A3Q7HF05_SOLLC; Uncharacterized protein
STRING	Solyc07g063840.1.1	1e-111	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15523	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	2e-08	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc07g063840.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]