PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g064000.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 221aa MW: 25221.2 Da PI: 3.9987

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g064000.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.8	2e-10	129	215	12	98
DUF573 12 eivlLqGlidfkaktgkspsd.didafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++++L+++ d++ sp+ ++ +vk+s ++k+s++ l eKi L k f++ +++ g++p+++++ d++if+ls++iWg+ Solyc07g064000.1.1 129 DLAILKAMCDYECIIRNSPQLsSFNNRLVYVKDSFpDLKMSREALEEKIIALCKNFNDVREQ--LGDDPRMDRPIDREIFNLSMIIWGT 215 489******988777666558999999999998469*******************9..*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MLPAIGRTDE EEEGQNGNRN SEQRETEEAG GNQLGETDED RNDDYEEEED MENLGSGNNV 60 NHQNSEENGS GNQESYDENH TSWLVVVEDD EDEEEERRRA AEKGKQPMSD GGGISITELH 120 DEDEDHHLDL AILKAMCDYE CIIRNSPQLS SFNNRLVYVK DSFPDLKMSR EALEEKIIAL 180 CKNFNDVREQ LGDDPRMDRP IDREIFNLSM IIWGTKVIPR *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g064000.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210356	0.0	Solanum lycopersicum chromosome 7 clone C07HBa0130B18, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7HF32	1e-159	A0A3Q7HF32_SOLLC; Uncharacterized protein
STRING	Solyc07g064000.1.1	1e-160	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17221	5	5

Link Out ? help Back to Top
Phytozome	Solyc07g064000.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]