PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g065580.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 179aa MW: 20310.3 Da PI: 9.6055

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g065580.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	91.2	1e-28	19	106	7	94
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 lP+an++rim+ +lP+naki + +ke++q+ s +i +t++a ++c+ e+rkt++++d+lwa+ ++G+ ++ l +yl++y e + Solyc07g065580.1.1 19 QLPMANLTRIMRGILPTNAKINDGSKESMQKLGSYYINRITKKAKERCNMERRKTVTAEDILWAMINMGLTIHARLLAQYLNRYHEYN 106 79**********************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-27	17	108	IPR009072	Histone-fold
SuperFamily	SSF47113	1.07E-22	18	107	IPR009072	Histone-fold
Pfam	PF00808	1.4E-17	19	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MTNVNTGVDQ LARRLLEVQL PMANLTRIMR GILPTNAKIN DGSKESMQKL GSYYINRITK 60 KAKERCNMER RKTVTAEDIL WAMINMGLTI HARLLAQYLN RYHEYNSVSY YNVRKPHPNE 120 PIPGYPYPHF PPNVLFYDPV TAALVTSRDF EMAAENDGSP SEASTSIVMP AYPFRQLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-25	20	104	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g065580.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210345	0.0	Solanum lycopersicum chromosome 7 clone C07HBa0001N06, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025887968.1	1e-132	transcriptional activator hap3 isoform X2
TrEMBL	A0A3Q7HIE7	1e-130	A0A3Q7HIE7_SOLLC; Uncharacterized protein
STRING	Solyc07g065580.1.1	1e-131	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14746	5	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	8e-28	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	Solyc07g065580.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]