PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g006220.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 247aa MW: 28600.9 Da PI: 10.0295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g006220.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	18	95	11	99
HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 k+ ++ +p f+ ++ g+++ ++ + ++g++W vk+ ++ + l++GWk+F+k+n+L+ gD ++Fk++g++ef v++f++ Solyc08g006220.2.1 18 YKH-CIKIPIGFL-KYlkGLNH---IKQAILRSRGKKWLVKV--TGWR----LEEGWKKFAKENDLQLGDLLIFKHEGDMEF--EVSIFDS 95 444.599***9.66665553...44555677*****..5555....99********************999999..9999986 PP
2	B3	51.9	1.3e-16	154	232	5	87
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 +++ +++++++l++p +f++++g+ +++ +++l de+ rsW+v l + ++ +++GW +F kangL+egD+ F+l+++ Solyc08g006220.2.1 154 TIRRYTFTKAILYFPMRFVKSNGLMSRS--EMILVDEKQRSWSVLL--GQMEHHFGIKRGWPQFRKANGLQEGDTYKFELTNN 232 4678999*************998555..8***********..88888899*********************9764 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-19	4	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-19	5	98	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.985	7	96	IPR003340	B3 DNA binding domain
CDD	cd10017	2.14E-17	8	94	No hit	No description
SMART	SM01019	2.7E-17	10	96	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.2E-12	17	95	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.6E-18	144	237	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-18	148	239	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.15E-13	149	242	No hit	No description
PROSITE profile	PS50863	12.901	150	243	IPR003340	B3 DNA binding domain
SMART	SM01019	5.4E-13	151	244	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.3E-15	154	234	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MKVASKKPRF FKPIQPGYKH CIKIPIGFLK YLKGLNHIKQ AILRSRGKKW LVKVTGWRLE 60 EGWKKFAKEN DLQLGDLLIF KHEGDMEFEV SIFDSSHCDR EYAEYLQEEE GNYVDATSKK 120 VEKDLRHKTS DMTTPISQTP ASTSADADPH FISTIRRYTF TKAILYFPMR FVKSNGLMSR 180 SEMILVDEKQ RSWSVLLGQM EHHFGIKRGW PQFRKANGLQ EGDTYKFELT NNGTIPIIHM 240 SKYSGN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g006220.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009283	1e-170	Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888305.1	1e-173	putative B3 domain-containing protein REM15
TrEMBL	A0A3Q7IDZ7	0.0	A0A3Q7IDZ7_SOLLC; Uncharacterized protein
STRING	Solyc08g006220.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA322	15	171
Representative plant	OGRP2682	2	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24700.1	9e-42	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc08g006220.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]