PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g007020.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 184aa MW: 20817.3 Da PI: 9.3615

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g007020.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.4	2.8e-23	58	129	54	122
NAM 54 eekewyfFskrdkkyatgkrknra...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 ++ +w+fF +rdkky++g+r+nra tk+gyW+atgkd +v+ ++ e+vg +ktLvfy+gr+p g ktdW+ Solyc08g007020.1.1 58 SRYRWFFFYPRDKKYSNGSRANRAiraTKAGYWNATGKDGKVVFHEPEVVGYRKTLVFYQGRSPLGDKTDWM 129 3349*************9999645588***********9************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.703	10	157	IPR003441	NAC domain
Pfam	PF02365	5.2E-9	55	129	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-21	56	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MRGGEKGFCW WFGFRQRRDS GGCDSISLAS RTMKRGGGGN DALEMVEISR TEIFPAKSRY 60 RWFFFYPRDK KYSNGSRANR AIRATKAGYW NATGKDGKVV FHEPEVVGYR KTLVFYQGRS 120 PLGDKTDWMD DECPRYEFPN VASWQPNDRI EVTTSSTSPL KFGEVEPSGD LSSFGCVSPY 180 SIH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-16	23	132	26	139	NO APICAL MERISTEM PROTEIN
3swm_A	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_B	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_C	5e-16	23	132	29	142	NAC domain-containing protein 19
3swm_D	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_A	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_B	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_C	5e-16	23	132	29	142	NAC domain-containing protein 19
3swp_D	5e-16	23	132	29	142	NAC domain-containing protein 19
4dul_A	4e-16	23	132	26	139	NAC domain-containing protein 19
4dul_B	4e-16	23	132	26	139	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g007020.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009760809.1	9e-28	PREDICTED: protein ATAF2-like
Refseq	XP_016501877.1	9e-28	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A3Q7HHL9	1e-95	A0A3Q7HHL9_SOLLC; Uncharacterized protein
STRING	Solyc08g007020.1.1	1e-134	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA28776	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	3e-26	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	Solyc08g007020.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]