PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g028850.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 109aa    MW: 12280 Da    PI: 8.7275
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g028850.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.62.2e-149108292
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk......kvkaeek...ewyfFskrdkkyatgkrknratksg 81 
                           GfrF+Ptd e v  +L + ++gk ++++ +  ++vd y+  ePwd+ +      + +++++   ++ fF+++ kk+ +++ +  + ++g
  Solyc08g028850.1.1   9 KEGFRFSPTDTEAV-TFLLRLIAGKFMNVSGFiTTHVDTYSKqEPWDICShgvpycN-YNGDNdcsQYPFFITKLKKKGKSRYSGDVGNKG 97 
                         68************.8999*******99999834556877544*****634677743.3444424244588888888887767777999** PP

                 NAM  82 yWkatgkdkev 92 
                          Wk++gk+k+v
  Solyc08g028850.1.1  98 CWKHQGKSKPV 108
                         *******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-117108IPR003441NAC domain
PROSITE profilePS5100515.1678108IPR003441NAC domain
PfamPF023658.8E-710106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MECIIENLKE GFRFSPTDTE AVTFLLRLIA GKFMNVSGFI TTHVDTYSKQ EPWDICSHGV  60
PYCNYNGDND CSQYPFFITK LKKKGKSRYS GDVGNKGCWK HQGKSKPV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086LKKKGKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g028850.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2459781e-103Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-3l17 map 1, complete sequence
GenBankAC2461931e-103Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-27p13 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169693.16e-54PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A3Q7IH215e-76A0A3Q7IH21_SOLLC; Uncharacterized protein
STRINGSolyc08g028850.1.18e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-08NAC domain containing protein 20
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]