PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g048370.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 327aa    MW: 36484.1 Da    PI: 8.8306
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g048370.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-39421842134
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssas 83 
                          g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk +eWLl++a p+i el+ +         s        +e++ss+++
  Solyc08g048370.2.1  42 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKVVEWLLKAAAPSIAELPPLedlqdtlqlS--------NEKRSSEHG 124
                         689*************************************************************5444333321........333333333 PP

                 TCP  84 nsssg........kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                         ++s++         +++++++ ++s++s+ s l+l++ +sr kar+rarer +ek ++ +
  Solyc08g048370.2.1 125 FDSADvemdddlnYNNQQQPSCSNSETSKGSGLSLSRsDSRVKARERARERATEKVANHH 184
                         333335666666666666778888888888899**999****************998864 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3943181IPR005333Transcription factor, TCP
PROSITE profilePS5136930.95844102IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.952162179IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MSNKEDEQYD VGEVKKSGDL GGGIGKLYGW PTSRIVRVSR ASGGKDRHSK VLTSKGLRDR  60
RVRLSVNTAI QFYDLQDRLG CDQPSKVVEW LLKAAAPSIA ELPPLEDLQD TLQLSNEKRS  120
SEHGFDSADV EMDDDLNYNN QQQPSCSNSE TSKGSGLSLS RSDSRVKARE RARERATEKV  180
ANHHRNMHPS SSFTELLTGG MSDNNNNKTS VNDDQNTPRQ WSTNPLEYFT DGQIYLGNTL  240
RPVSPPMFSI TGGPFSPILP LLCLVIRGTD HILVPQLDMT TSIQIRKEKK RSNFKFHLVI  300
LNGSSLKVPK EAPIYAFLCY RLIILY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2049103155Putative transcription factor PCF6
5zkt_B6e-2049103155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.147641e-176fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g048370.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963411e-172Solanum lycopersicum TCP transcription factor 24 (TCP24) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010324913.10.0transcription factor TCP2-like
RefseqXP_010324914.10.0transcription factor TCP2-like
RefseqXP_010324915.10.0transcription factor TCP2-like
SwissprotQ93V436e-51TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A3Q7HNW20.0A0A3Q7HNW2_SOLLC; Uncharacterized protein
STRINGSolyc08g048370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]