PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g062530.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 83aa MW: 9469.56 Da PI: 6.7912

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g062530.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.4e-19	26	77	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++L ++F+k++ +++++ ++L ++ gL+ +qVk+WFqNrRa+ k Solyc08g062530.1.1 26 HKYSMEQIQILDAFFKKCPQLDEDQQKQLGSEAGLDHKQVKFWFQNRRAQAK 77 6899*********************************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-18	5	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-16	8	77	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-6	16	82	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.799	19	79	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	26	77	IPR001356	Homeobox domain
CDD	cd00086	6.60E-13	26	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MTDSGEEPAG ESSNSQKRSE SHGQYHKYSM EQIQILDAFF KKCPQLDEDQ QKQLGSEAGL 60 DHKQVKFWFQ NRRAQAKVIL II*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g062530.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010930	6e-71	Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025886908.1	3e-39	homeobox-leucine zipper protein HDG8-like isoform X2
Swissprot	Q69T58	2e-19	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A3Q7H9V3	2e-44	A0A3Q7H9V3_SOLLC; Uncharacterized protein
TrEMBL	A0A3Q7HMI1	6e-43	A0A3Q7HMI1_SOLLC; Uncharacterized protein
STRING	Solyc08g062530.1.1	8e-55	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA29007	2	2
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17320.1	1e-18	homeodomain GLABROUS 9

Link Out ? help Back to Top
Phytozome	Solyc08g062530.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]