PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g067360.2.1

Common Name

LOC101243805

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 259aa MW: 29349.7 Da PI: 5.6705

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g067360.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3.1e-30	129	188	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs edp++++ +YegeHnh+ Solyc08g067360.2.1 129 VKDGYNWRKYGQKVTRDNPYPRAYYKCSFApTCPVKKKVQRSIEDPSILVGVYEGEHNHP 188 58*************************99**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-29	120	190	IPR003657	WRKY domain
PROSITE profile	PS50811	27.06	124	190	IPR003657	WRKY domain
SuperFamily	SSF118290	7.32E-26	125	190	IPR003657	WRKY domain
SMART	SM00774	1.6E-33	129	189	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	130	188	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDTNLGDNNF SIDLNTNLSL HNTNTSPSET LDEELIRTRE ENKKLVTMLT NLCEKYNSLQ 60 THLIELLQKY SSNNEEDNSN LLLSRKRKAE EECCVNNFEE ASPKRPREIT TNVSTVCIKT 120 NRSDQTSVVK DGYNWRKYGQ KVTRDNPYPR AYYKCSFAPT CPVKKKVQRS IEDPSILVGV 180 YEGEHNHPHP SQTEITVPLV NQDVSTFSNK FMEDIETNSL QQHLVQQMAT SLTSSPTFTA 240 AVAAAISGKI FEYDLPFN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-21	123	191	11	78	Probable WRKY transcription factor 4
2lex_A	3e-21	123	191	11	78	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.14815	0.0	fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250\|UniProtKB:Q9SUP6}.

Function -- GeneRIF ? help Back to Top
study indicated SlWRKY45 to be a potential transcription factor whose manipulation by the invading nematode might be critical for coordination of hormone signals supporting favorable condition for nematode development in root tissue. [WRKY45] [PMID: 29271721]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g067360.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001304843.1	0.0	WRKY transcription factor 45
Swissprot	Q9SAH7	8e-60	WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBL	A0A3Q7HRE6	0.0	A0A3Q7HRE6_SOLLC; Uncharacterized protein
STRING	Solyc08g067360.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4500	22	42
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	1e-58	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Solyc08g067360.2.1
Entrez Gene	101243805

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang Y, et al. Regulation of oncogene expression in T-DNA-transformed host plant cells. PLoS Pathog., 2015. 11(1): p. e1004620 [PMID:25615824] Geilen K,Böhmer M Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana. Sci Rep, 2015. 5: p. 13369 [PMID:26293691] Geilen K,Böhmer M Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation. Plant Signal Behav, 2015. 10(11): p. e1106659 [PMID:26479147] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Carrió-Seguí À,Romero P,Sanz A,Peñarrubia L Interaction Between ABA Signaling and Copper Homeostasis in Arabidopsis thaliana. Plant Cell Physiol., 2016. 57(7): p. 1568-1582 [PMID:27328696] Lu K, et al. Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance. J. Exp. Bot., 2016. 67(17): p. 5009-27 [PMID:27406784] Birkenbihl RP,Kracher B,Roccaro M,Somssich IE Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. Plant Cell, 2017. 29(1): p. 20-38 [PMID:28011690] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643] Zhang S, et al. The Arabidopsis Mitochondrial Protease FtSH4 Is Involved in Leaf Senescence via Regulation of WRKY-Dependent Salicylic Acid Accumulation and Signaling. Plant Physiol., 2017. 173(4): p. 2294-2307 [PMID:28250067] Chinnapandi B,Bucki P,Braun Miyara S SlWRKY45, nematode-responsive tomato WRKY gene, enhances susceptibility to the root knot nematode; M. javanica infection. Plant Signal Behav, 2017. 12(12): p. e1356530 [PMID:29271721] Cheng P, et al. The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis. Front Plant Sci, 2018. 9: p. 182 [PMID:29497438]