PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc08g081630.1.1

Common Name

LOC101245481

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 232aa MW: 26406.9 Da PI: 8.9548

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc08g081630.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102	3.6e-32	152	210	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ Solyc08g081630.1.1 152 LDDGFKWRKYGQKAVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDTSIVVTTYEGIHNHP 210 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.4E-32	139	210	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-28	144	211	IPR003657	WRKY domain
PROSITE profile	PS50811	28.116	147	212	IPR003657	WRKY domain
SMART	SM00774	5.9E-37	152	211	IPR003657	WRKY domain
Pfam	PF03106	2.7E-25	153	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MHYNNSTLLS MDAGEELHLP PPPPPPPLPP PTTLLSPANF YMQQPNDQLA MQNNCNSSQV 60 GLICDNIDWA GLLSGSSSIN NNNESIATTP NVSINPRNMN MNTNMNMMEG GEQHQQPLLQ 120 LQEHNFRREK GRKRKYVPPR VAFHTRSTED ILDDGFKWRK YGQKAVKNST HPRSYYRCTH 180 HTCNVKKQIQ RLSKDTSIVV TTYEGIHNHP CEKLMETLSP ILKQLQFLSR F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-24	140	209	2	71	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc08g081630.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004245563.1	1e-174	probable WRKY transcription factor 56
TrEMBL	A0A3Q7HU30	1e-173	A0A3Q7HU30_SOLLC; Uncharacterized protein
STRING	Solyc08g081630.1.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	1e-56	WRKY DNA-binding protein 56

Link Out ? help Back to Top
Phytozome	Solyc08g081630.1.1
Entrez Gene	101245481

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]