PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g005030.1.1

Common Name

LOC101257998

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 147aa MW: 16469.6 Da PI: 7.1969

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g005030.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ++R+ Solyc09g005030.1.1 62 ARLRWTPELHLRFVHAVERLGGQDRATPKLVLQMMNIKGLSIAHVKSHLQMFRS 115 79***************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-30	58	116	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.958	58	118	IPR017930	Myb domain
SuperFamily	SSF46689	8.78E-16	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-23	62	117	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-10	63	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MLEDSGETGC NSKTSCNFEN EVLEENDASS KFKDGGSSSE STLEESEKIK PCVRPYVRSK 60 MARLRWTPEL HLRFVHAVER LGGQDRATPK LVLQMMNIKG LSIAHVKSHL QMFRSKKTDD 120 QSQGIGHHHK LFMEGGDPNI QYDPIP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	62	117	2	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-19	62	117	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g005030.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240197	6e-29	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-208l2 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246781.1	1e-107	probable transcription factor KAN2
TrEMBL	M1CJ60	8e-82	M1CJ60_SOLTU; Uncharacterized protein
STRING	Solyc09g005030.1.1	1e-106	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4382	21	41
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-44	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc09g005030.1.1
Entrez Gene	101257998

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]