PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g007580.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 201aa MW: 21988.5 Da PI: 4.6251

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g007580.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.9e-12	59	103	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++++ +G+g+W++I+r+ +Rt+ q+ s+ qky Solyc09g007580.1.1 59 AWTEEEHRSFLRGLDIYGKGDWRSISRHCVITRTAMQVASHAQKY 103 6*************************9989**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.341	1	25	IPR017884	SANT domain
PROSITE profile	PS51294	16.875	52	108	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	55	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	56	106	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	6.8E-15	58	106	IPR006447	Myb domain, plants
CDD	cd00167	2.65E-10	59	104	No hit	No description
Pfam	PF00249	1.2E-10	59	103	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-10	59	105	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEEALPGKTV DEIKDHYNIL LEDIDAIDFG GAPLPNYAEI QSNVNQNINA DVQWRRGAAW 60 TEEEHRSFLR GLDIYGKGDW RSISRHCVIT RTAMQVASHA QKYFKRVEAN KKGNRRRRAK 120 PSVLDITGVD TELGGTSEVP ITADMIDPAC EGSQAVPNTS TESMCYPEST NAEQMTTVVG 180 GENAFVNVDA SSGTSELLLV *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269\|PubMed:26243618}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g007580.1.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU302231	2e-20	S.lycopersicum DNA sequence from clone LE_HBa-291F9, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025888763.1	1e-144	transcription factor SRM1-like
Swissprot	Q9FNN6	1e-35	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A3Q7HY87	1e-142	A0A3Q7HY87_SOLLC; Uncharacterized protein
STRING	Solyc09g007580.1.1	1e-149	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4454	13	29
Representative plant	OGRP12301	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-36	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc09g007580.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]