PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g008030.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 202aa MW: 21246 Da PI: 8.0766

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g008030.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	43	120	6	83
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++ s Solyc09g008030.1.1 43 SSSKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTVPATQVTTTSENIPLS 120 579*********************************************************999997774443333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.5E-31	44	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.319	45	99	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGSEIVVSGA ISGVGNGSVN SETNGKTALA VVPTKKKNAL SVSSSKDRHT KVNGRGRRVR 60 MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTVPATQV TTTSENIPLS 120 QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL 180 LLQPVTADDG EEKVAEEDEK Q*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25784	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g008030.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF647604	0.0	Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233821.2	1e-147	TCP transcription factor 19
Swissprot	Q9SJK7	4e-41	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A3Q7HYI7	1e-145	A0A3Q7HYI7_SOLLC; Uncharacterized protein
STRING	Solyc09g008030.1.1	1e-146	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-35	TCP family protein

Link Out ? help Back to Top
Phytozome	Solyc09g008030.1.1
Entrez Gene	100736522

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Parapunova V, et al. Identification, cloning and characterization of the tomato TCP transcription factor family. BMC Plant Biol., 2014. 14: p. 157 [PMID:24903607]