PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g008390.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 132aa    MW: 15545 Da    PI: 10.4296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g008390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W  eEde+l+ +++ lG ++W++ a+  g++R++k+c++rw +yl
  Solyc09g008390.1.1 17 KGPWLDEEDERLAYVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 64
                        79********************************************97 PP
2Myb_DNA-binding54.33e-1773115448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l
  Solyc09g008390.1.1  73 ITQDEEHLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 115
                         59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0551264IPR017930Myb domain
SuperFamilySSF466892.24E-2715111IPR009057Homeodomain-like
SMARTSM007172.2E-121666IPR001005SANT/Myb domain
PfamPF002492.1E-131764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-201871IPR009057Homeodomain-like
CDDcd001673.94E-81964No hitNo description
PROSITE profilePS5129426.19965119IPR017930Myb domain
SMARTSM007173.6E-1469117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2572118IPR009057Homeodomain-like
PfamPF002493.3E-1573115IPR001005SANT/Myb domain
CDDcd001676.00E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDFTLQLVTM EEEKLRKGPW LDEEDERLAY VIAILGERRW DALAKASGLR RSGKSCRLRW  60
MNYLRPNLKH GHITQDEEHL IIKLQKQLGN KWSKIAKQLP GRTDNEIKNY WRSHLRKKTL  120
ICEQGSIRHS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27151192105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-271511956159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-271511956159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27151192105C-Myb DNA-Binding Domain
1msf_C1e-27151192105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g008390.1.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167290.14e-85PREDICTED: myb-related protein MYBAS1-like
SwissprotQ9SCP19e-52MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3Q7HYP87e-84A0A3Q7HYP8_SOLLC; Uncharacterized protein
STRINGSolyc09g008390.1.13e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-54myb domain protein 27
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]