PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g010490.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 215aa MW: 24304.8 Da PI: 5.1893

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g010490.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.8	6.2e-27	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+++++C ++C+lap fp+++ +f v +lF+ + + +l+++ ++e + +++++l+ e ++r ++PvyG+++v kl+ ++e++ Solyc09g010490.1.1 9 KCAACKYQNKRCDENCPLAPFFPSNKIDEFDKVIRLFSFDFLKDMLNSVTTNEeKAKMVETLILETKIRSENPVYGSIAVTEKLSLEIENT 99 5**********************************************6655499******************************* PP DUF260 91 kaelallkee 100 ++el+l+++ Solyc09g010490.1.1 100 QKELDLIQKT 109 **999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.288	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-26	9	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MNDADARGKC AACKYQNKRC DENCPLAPFF PSNKIDEFDK VIRLFSFDFL KDMLNSVTTN 60 EEKAKMVETL ILETKIRSEN PVYGSIAVTE KLSLEIENTQ KELDLIQKTI AFYKELDGRS 120 SLNKVKAVEK GHEIHESLID GDELFLRNLS PYALFISQNP FYSPNICNSI IGVVNVKLQE 180 TFSGGMPFYV HCEASPKRME SGVRVESELK NFVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g010490.1.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004253529.1	3e-81	LOB domain-containing protein 24-like, partial
TrEMBL	A0A3Q7HZP5	1e-118	A0A3Q7HZP5_SOLLC; Uncharacterized protein
STRING	Solyc09g010490.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	8e-21	LOB domain-containing protein 23

Link Out ? help Back to Top
Phytozome	Solyc09g010490.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]