PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g010670.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 196aa    MW: 22223.2 Da    PI: 4.9004
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g010670.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.76.1e-212721671
             E2F_TDP 16 lleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71
                        +++k+e+ g++t++eva+e+++e               d+kn+rRR+YD lNVL+al++ie+ +++eirwkg
  Solyc09g010670.2.1  2 VCKKVEDkGRITYSEVADEIIAElmtmensssvplnesDEKNIRRRVYDSLNVLMALDVIER-DRKEIRWKG 72
                        89**9999******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.6E-16172IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.7E-17272IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-14273IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-30276IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.4E-3776193IPR014889Transcription factor DP, C-terminal
CDDcd144584.62E-2978180IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-3680193No hitNo description
PfamPF087818.6E-3280192IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVCKKVEDKG RITYSEVADE IIAELMTMEN SSSVPLNESD EKNIRRRVYD SLNVLMALDV  60
IERDRKEIRW KGLPNSDARD MEETKKGHAE LLAKIGKKAA YLKDLEEQLA SLQNLKLRNE  120
QSCKSTNGPS QGFSLPFILV QTAPHATVEV EISEDMQLVH FDFNSVPFSL HDDAYVLKLM  180
RNYELLESES VSRTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B9e-222791995PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g010670.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071357.11e-143transcription factor-like protein DPA isoform X1
RefseqXP_019071358.11e-143transcription factor-like protein DPA isoform X3
SwissprotQ9FNY32e-76DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A3Q7IU121e-141A0A3Q7IU12_SOLLC; Uncharacterized protein
STRINGSolyc09g010670.2.11e-142(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1488399
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.37e-79Transcription factor DP
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]