PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g014700.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 175aa MW: 19893.5 Da PI: 8.4696

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g014700.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.3	7.6e-31	9	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++e+++++l+ eA++r ++PvyG++++ +kl+ q+e++ Solyc09g014700.1.1 9 KCAACKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDTEKKEKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99 5*********************************************95556699******************************* PP DUF260 91 kaelallke 99 +e++l+k+ Solyc09g014700.1.1 100 MKEIDLVKK 108 **99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.619	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-31	9	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MNDAGARGKC AACKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADT 60 EKKEKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA 120 FCPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENHANQD VEKDRVHFND NDGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-18	5	104	7	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-18	5	104	7	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g014700.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246831.1	1e-120	LOB domain-containing protein 24-like
TrEMBL	A0A3Q7HYK9	3e-73	A0A3Q7HYK9_SOLLC; Uncharacterized protein
TrEMBL	A0A3Q7I0Y7	8e-74	A0A3Q7I0Y7_SOLLC; Uncharacterized protein
STRING	Solyc09g014700.1.1	1e-127	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-25	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Solyc09g014700.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]