PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g015110.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 224aa    MW: 25675 Da    PI: 4.347
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g015110.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.93e-1248861048
                        HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHH CS
            Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWF 48
                        + +e Lee+F +n++p  + + +L++ lgL+ +qVk+WF
  Solyc09g015110.1.1 48 QIIEKLEEVFSQNPNPGNDVIDQLSEDLGLDATQVKIWF 86
                        56899********************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-103699IPR009057Homeodomain-like
SMARTSM003890.002238100IPR001356Homeobox domain
CDDcd000862.06E-94786No hitNo description
Gene3DG3DSA:1.10.10.602.9E-104887IPR009057Homeodomain-like
PfamPF000461.1E-94886IPR001356Homeobox domain
PROSITE profilePS5007110.7875096IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNFICSSPFY FLSCFILLSF MTSQNDACVG SSSGQHIGKS IFQHSYQQII EKLEEVFSQN  60
PNPGNDVIDQ LSEDLGLDAT QVKIWFYDKG NDIKAQQIME EQSKIEHLKN KIMYSENFQM  120
CLNLKQQFCA ASNNPEQQRA ILQDLLNEYA KFGEDVMMIS KIIDHFIEDM EGYHDILFSE  180
FESKLDSLSN YKDPKGLDLE LRLGYYKDPN GLDLELKLGL KSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g015110.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325776.21e-163homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
TrEMBLA0A3Q7IVK11e-161A0A3Q7IVK1_SOLLC; Uncharacterized protein
STRINGSolyc09g015110.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1522966
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.18e-11homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]