PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g018130.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 188aa MW: 21143.9 Da PI: 7.7261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g018130.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.1e-08	102	147	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+R ++i fe+Lr l+P+ s K + +i kAv++I +L Solyc09g018130.1.1 102 HISTERKRTKKIWILFETLRALIPNI----SAKADECTIIDKAVNHILKL 147 7789*******************6....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.865	97	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-12	100	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-10	101	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.64E-7	102	149	No hit	No description
Pfam	PF00010	1.2E-5	102	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-4	103	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNGGGESNHV FSWEIDDVLS YLNLNDNQIG SGTTFEGDMM TNPIRFDTYQ SLTVVNEVVE 60 SSTNVAKKRS PPNLKKNGKG IVEPKSSVDG VRDKGSLEHE IHISTERKRT KKIWILFETL 120 RALIPNISAK ADECTIIDKA VNHILKLKNT FEKLKRENLE GFQEHNIRLI SSQKFPDVGN 180 SWEKLFG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g018130.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004228808.3	1e-105	transcription factor bHLH95-like
TrEMBL	A0A3Q7EBD9	1e-104	A0A3Q7EBD9_SOLLC; Uncharacterized protein
STRING	Solyc09g018130.1.1	1e-135	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA29192	2	2
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	9e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc09g018130.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]