PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g057870.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 170aa MW: 19108.8 Da PI: 9.208

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g057870.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.2e-27	62	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA+++GF +r+++ ++s rnge ++r++vC+keg++++++++ + +++ r gCka++ vkke++gkw v+kl++eHnHel+ Solyc09g057870.2.1 62 YYSTYATHLGFIMRVDAFRRSMRNGELVWRRLVCNKEGFSKSRQSQ--NGKKKCRAIREGCKAMIIVKKEQSGKWLVAKLVKEHNHELV 148 8***************************************9988..888888899****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.2E-25	62	148	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MVQTSSPKEF TTNQDNATDD VGIVETSTEK EFTPNGLEVE GRSNMEPYVG MEFESEEAAK 60 AYYSTYATHL GFIMRVDAFR RSMRNGELVW RRLVCNKEGF SKSRQSQNGK KKCRAIREGC 120 KAMIIVKKEQ SGKWLVAKLV KEHNHELVVK PVNTPKGAIL CQTPVIQGF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.615	0.0	fruit\| leaf\| trichome

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g057870.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010326272.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X2
Refseq	XP_015086379.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X5
Refseq	XP_015086380.1	1e-122	protein FAR1-RELATED SEQUENCE 1 isoform X6
Swissprot	Q9SZL8	2e-24	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7I445	1e-114	A0A3Q7I445_SOLLC; Uncharacterized protein
STRING	Solyc09g057870.2.1	1e-125	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12791	15	20
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-50	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc09g057870.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]