PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc09g057880.2.1

Common Name

LOC101266066

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 262aa MW: 29680.6 Da PI: 7.2372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc09g057880.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.3	8.1e-26	95	185	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ YA++vGF +r+++ ++s+ +++ +r++ C+k+g+ + k+++ r+ r++tr gCka+l vk +k++kw+vt++++eH+H+l+p Solyc09g057880.2.1 95 EFYDYYARRVGFIMRIDQCRRSEVDKRSLSRRLSCNKQGHYVKMKNHHGPPRKARTSTREGCKAMLLVKVNKSDKWVVTRFVKEHTHQLVP 185 6********************************************9***************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-23	95	185	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MFEEEEPDLG EETSEIRIKA STALNPQNLV PSGTSKAASA VHTSDTHHFG VAVDLKAGVT 60 TIDCSAESQS VVCQDNVVPE PFIGMEFESE YAAKEFYDYY ARRVGFIMRI DQCRRSEVDK 120 RSLSRRLSCN KQGHYVKMKN HHGPPRKART STREGCKAML LVKVNKSDKW VVTRFVKEHT 180 HQLVPSGCSS GNAMDKKDRR IQELSMELEH QDKLCDLYRE QLVTFLENVE QQMELMSKKI 240 QVAVNNVKEV EAEVQKQPNS K*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.15191	0.0	callus\| fruit\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc09g057880.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010326278.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_025888596.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Refseq	XP_025888597.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
TrEMBL	A0A3Q7I1N9	0.0	A0A3Q7I1N9_SOLLC; Uncharacterized protein
STRING	Solyc09g057880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-57	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Solyc09g057880.2.1
Entrez Gene	101266066

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]