PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g060160.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 80aa    MW: 9111.99 Da    PI: 7.8102
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g060160.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.97.3e-082664543
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43
                        ++++ eq+++L ++F+k+++p++++ ++L ++ gL  +q
  Solyc09g060160.1.1 26 HKHSMEQIQRLDAFFKKCPHPDEDQQKQLGSEAGLHHKQ 64
                        57899***************************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-10764IPR009057Homeodomain-like
SuperFamilySSF466893.85E-62464IPR009057Homeodomain-like
PfamPF000462.2E-52664IPR001356Homeobox domain
CDDcd000862.67E-42964No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MTDSVEEPAG ESSHSQKKSE RHGQYHKHSM EQIQRLDAFF KKCPHPDEDQ QKQLGSEAGL  60
HHKQSSFGSK TEGLKQRYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g060160.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0109303e-54Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0034G06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025888845.15e-31homeobox-leucine zipper protein ROC8-like
TrEMBLA0A3Q7I2Y03e-50A0A3Q7I2Y0_SOLLC; Uncharacterized protein
STRINGSolyc09g060160.1.15e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2938622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.13e-14HD-ZIP family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]