PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc09g064920.2.1
Common NameLOC101252325
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 283aa    MW: 31387 Da    PI: 5.0376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc09g064920.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.0004158204455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +   +r RR +i ++++ L el   +   +++   Ka+   + +++Ik+Lq
  Solyc09g064920.2.1 158 RAALSDRHRRMKIAERIDALGELFSCS--KQGG---KASQMDEIIDHIKYLQ 204
                         556778****************99996..2555...5566679999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.8E-7152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-8153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.179154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.94E-4155206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGEQNQPNFV GTQWAFLGST NDSFYLAGHE FNNQYMTEVG IDGIHYVPVP SPQWIHDQQT  60
PHNYVEYLAE NVVSEVDASV EATGFSLLEG SADIISQEIR YPRPYYEGVP PNCLNSSEHQ  120
RGALTWELRG NVRHASGPCS DASAAGSSYS SKSSRKARAA LSDRHRRMKI AERIDALGEL  180
FSCSKQGGKA SQMDEIIDHI KYLQFQMKDL SRSRLGGEPT SIPFVFLEGC GHYILDEQQI  240
EPLEDTMGKL LEVNPSLATQ LLESKSLFVM PLALAEGLHH HE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.80590.0cell culture| flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc09g064920.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004247151.10.0transcription factor UNE12 isoform X1
TrEMBLA0A3Q7I5540.0A0A3Q7I554_SOLLC; Uncharacterized protein
STRINGSolyc09g064920.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96461617
Representative plantOGRP1252844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-16LJRHL1-like 2
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]